I didn’t grow up baking, but one crisp October afternoon, everything changed. Lily had just come home from school talking about apple cider muffins, and Jonah begged me to make something “apple-y.” With no clue where to start, I reached for what I had—apple cider, cinnamon, and determination.
That day, we made our first batch of apple cider whoopie pies. The smell alone—warm, sweet, and spiced—filled the house with comfort. The cookies came out soft and cake-like, and the cinnamon filling was creamy and light. Jonah called them “apple clouds,” and they’ve been a fall staple ever since.
These apple cider whoopie pies are surprisingly simple, and they hit the same cozy notes as our favorite southern fried apples and apple pie oatmeal cookies. Whether it’s a school bake sale or just a Saturday baking session, they always bring smiles.
If you’re new to baking or looking for something seasonal but easy, this is it. These whoopie pies are full of apple cider flavor and cinnamon warmth—exactly what fall should taste like.
Table of Contents
Apple Cider Whoopie Pie Ingredients & Easy Prep Tips
What You’ll Need for the Cookies
To get that rich apple flavor, the key is reduced apple cider. Simmering the cider down intensifies its sweetness and makes the flavor shine. I usually start with 1½ cups and reduce it to about ½ cup—it’s worth the extra step. You’ll also need flour, brown sugar, cinnamon, nutmeg, baking soda, and buttermilk for soft, tender cookies.
If you’ve made cinnamon apple bread before, these ingredients will feel familiar. The spices bring warmth, and the cider adds depth without being too sweet. I always use unsalted butter and a touch of vanilla to balance everything out.

Don’t Skip the Filling
The filling is where the magic happens. It’s a mix of cream cheese, butter, powdered sugar, and cinnamon. You want it smooth, not overly sweet. Let everything come to room temp first—cold cream cheese makes for a lumpy mess, and I learned that the hard way.
You can get creative here, too. Sometimes I’ll swirl in a spoonful of apple butter or use maple syrup instead of vanilla for a deeper fall vibe. If you’re short on time, the filling from our caramel apple cider cookies also works beautifully.
Quick tip: Chill the filling for 10 minutes before assembling. It sets faster and makes the pies easier to handle—especially with eager little hands in the kitchen.
Once your ingredients are ready, assembly is a breeze. Just scoop, bake, and sandwich. You’re halfway to fall dessert bliss.
How to Make Apple Cider Whoopie Pies from Scratch
Step-by-Step Baking Instructions
Start by reducing your apple cider. Pour 1½ cups into a small saucepan and simmer until it’s down to ½ cup. This takes about 15–20 minutes and is the key to bold apple flavor. Let it cool completely before adding it to your batter.
In one bowl, whisk flour, baking soda, salt, cinnamon, and nutmeg. In another, beat softened butter and brown sugar until creamy. Add eggs, vanilla, and the cooled cider. Alternate mixing in the dry ingredients and buttermilk until everything’s just combined.
Using a cookie scoop, drop batter onto a lined baking sheet. Keep them about 2 inches apart—they’ll puff up into soft domes. Bake at 350°F for 10–12 minutes, or until the tops spring back. Let them cool completely before filling.
For the filling, beat cream cheese and butter until smooth. Add powdered sugar, vanilla, and cinnamon. Mix until fluffy. Chill it briefly if needed—it spreads easier when slightly firm.
Tips for Whoopie Pie Success
Don’t overbake. These are meant to be soft and pillowy, like apple cinnamon rolls. If they crack or brown too much, they’ll lose that tender texture.
Keep sizes even. Matching similar sizes makes assembling them much easier (and prettier). If you’re not using a scoop, just eyeball it and smooth out any rough edges with a spoon.
And here’s a tip I picked up from making pumpkin brownies: store them in a sealed container with wax paper between layers to keep them soft and prevent sticking.
Once everything’s assembled, you’re in for the coziest, most satisfying fall dessert. They taste even better the next day—if they last that long.

Storing, Serving & Fun Variations
How to Store and Freeze Whoopie Pies
Apple cider whoopie pies store surprisingly well. Once assembled, keep them in an airtight container in the fridge for up to 4 days. Bring them to room temperature before serving—this brings out the full flavor and soft texture.
If you want to make them ahead, store the cookies and filling separately. When I know we’ll be busy, I bake the cookies, refrigerate them, and fill them the day we need them.
Freezing is easy, too. Wrap each whoopie pie in plastic wrap, then seal in a freezer bag. Thaw at room temp before enjoying. They’re just as soft and delicious.
Try These Tasty Variations
There are so many fun ways to mix things up. You can swap the cream cheese filling for a maple buttercream or use spiced marshmallow fluff. For extra texture, fold in finely chopped pecans or dried apple bits into the batter.
Want even more fall vibes? Add a caramel drizzle over the filling or roll the edges in crushed cinnamon cookies. It’s a little messy but so fun—my kids love helping with that part.
Looking for something with a similar flavor profile but a different format? Check out our baked apple fritters or cozy pumpkin bars—both are seasonal must-tries.
FAQs
How do I reduce apple cider for baking?
Simmer it on low heat until the volume reduces by half. This intensifies flavor without adding extra sugar.
Can I make these gluten-free?
Yes! Use a 1:1 gluten-free baking flour with xanthan gum included. Check the texture after baking—they should stay soft.
What’s the best filling alternative if I don’t like cream cheese?
Try vanilla or maple buttercream. Marshmallow fluff also works for a lighter option.
Do they need to be refrigerated?
Yes, especially with a dairy-based filling. But bring them to room temp before serving for best texture.

Apple Cider Whoopie Pies – Soft, Spiced & Full of Fall Flavor
- Total Time: 32 minutes
- Yield: 12 whoopie pies 1x
- Diet: Vegetarian
Description
These apple cider whoopie pies are soft, spiced, and filled with cinnamon cream cheese filling. A perfect fall dessert made from scratch.
Ingredients
1 ½ cups apple cider (reduced to ½ cup)
2 cups all-purpose flour
1 tsp baking soda
1 tsp cinnamon
¼ tsp nutmeg
¼ tsp salt
½ cup unsalted butter (softened)
1 cup brown sugar
2 large eggs
1 tsp vanilla extract
½ cup buttermilk
**FILLING:**
½ cup unsalted butter (softened)
4 oz cream cheese (softened)
1 ½ cups powdered sugar
½ tsp cinnamon
1 tsp vanilla extract
Instructions
1. Preheat oven to 350°F. Line baking sheet with parchment paper. 2. Simmer apple cider until reduced to ½ cup. Cool completely. 3. Whisk flour, baking soda, salt, cinnamon, and nutmeg in a bowl. 4. In another bowl, beat butter and sugar until creamy. 5. Add eggs, vanilla, and cooled cider. 6. Gradually add dry ingredients and buttermilk, mixing just until combined. 7. Scoop batter onto baking sheets. Bake 10–12 mins. Cool completely. 8. Beat cream cheese and butter until smooth. 9. Add powdered sugar, cinnamon, and vanilla. Mix until fluffy. 10. Spread filling on one cookie and top with another to make pies.
Notes
Chill the filling before assembling for best results.
Store leftovers in the fridge in a sealed container for up to 4 days.
- Prep Time: 20 minutes
- Cook Time: 12 minutes
- Category: Dessert
- Method: Baking
- Cuisine: American
Nutrition
- Serving Size: 1 whoopie pie
- Calories: 320
- Sugar: 28g
- Sodium: 210mg
- Fat: 14g
- Saturated Fat: 8g
- Unsaturated Fat: 5g
- Trans Fat: 0g
- Carbohydrates: 44g
- Fiber: 1g
- Protein: 3g
- Cholesterol: 55mg